GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Hvulgare_HORVU7Hr1G060620 [ HORVU7Hr1G060620]	chr7H	279638481	279639107	r1	Hordeum vulgare (Phytozome 13)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Hvulgare_HORVU7Hr1G060620.2 HORVU7Hr1G060620.2	Low	No	403	OG0049337		Get ORF Coding potential... Type: noncoding Potential: -0.864 Folding energies... MFEI: -25.020 AMFE: -0.440 GC content %: 56.824
Hvulgare_HORVU7Hr1G060620.3 HORVU7Hr1G060620.3	High	No	315	OG0049338		Get ORF Coding potential... Type: noncoding Potential: -1.012 Folding energies... MFEI: -27.841 AMFE: -0.487 GC content %: 57.143

Matches to external databases

The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias	Database	Version	Hit	Evalue
Hvulgare_HORVU7Hr1G060620.2	SwissProt	2021-04-01	F4KFT7	3.4e-10

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).