Hvulgare HORVU7Hr1G070270
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU7Hr1G070270 [ HORVU7Hr1G070270] |
chr7H | 380551227 | 380560192 | r1 | Hordeum vulgare (Phytozome 13) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU7Hr1G070270.1 HORVU7Hr1G070270.1 |
High | No | 694 | OG0002166 | Get ORF Coding potential... Type: noncoding Potential: -0.908 Folding energies... MFEI: -27.406 AMFE: -0.624 GC content %: 43.948 | |
| Hvulgare_HORVU7Hr1G070270.10 HORVU7Hr1G070270.10 |
Low | No | 2782 | OG0013424 | Get ORF Coding potential... Type: noncoding Potential: -1.113 Folding energies... MFEI: -28.817 AMFE: -0.649 GC content %: 44.428 | |
| Hvulgare_HORVU7Hr1G070270.11 HORVU7Hr1G070270.11 |
Low | No | 3224 | OG0002167 | Get ORF Coding potential... Type: noncoding Potential: -1.181 Folding energies... MFEI: -28.164 AMFE: -0.658 GC content %: 42.773 | |
| Hvulgare_HORVU7Hr1G070270.12 HORVU7Hr1G070270.12 |
Low | No | 3484 | OG0002167 | Get ORF Coding potential... Type: noncoding Potential: -1.187 Folding energies... MFEI: -27.948 AMFE: -0.664 GC content %: 42.078 | |
| Hvulgare_HORVU7Hr1G070270.13 HORVU7Hr1G070270.13 |
Low | No | 3494 | OG0002167 | Get ORF Coding potential... Type: noncoding Potential: -1.188 Folding energies... MFEI: -27.862 AMFE: -0.663 GC content %: 42.044 | |
| Hvulgare_HORVU7Hr1G070270.14 HORVU7Hr1G070270.14 |
Low | No | 1239 | OG0002166 | Get ORF Coding potential... Type: noncoding Potential: -1.047 Folding energies... MFEI: -24.875 AMFE: -0.619 GC content %: 40.194 | |
| Hvulgare_HORVU7Hr1G070270.16 HORVU7Hr1G070270.16 |
High | No | 521 | OG0002166 | Get ORF Coding potential... Type: noncoding Potential: -0.826 Folding energies... MFEI: -27.313 AMFE: -0.619 GC content %: 44.146 | |
| Hvulgare_HORVU7Hr1G070270.17 HORVU7Hr1G070270.17 |
High | No | 266 | OG0049447 | Get ORF Coding potential... Type: noncoding Potential: -0.973 Folding energies... MFEI: -20.902 AMFE: -0.545 GC content %: 38.346 | |
| Hvulgare_HORVU7Hr1G070270.2 HORVU7Hr1G070270.2 |
High | No | 642 | OG0002166 | Get ORF Coding potential... Type: noncoding Potential: -0.886 Folding energies... MFEI: -29.065 AMFE: -0.637 GC content %: 45.639 | |
| Hvulgare_HORVU7Hr1G070270.4 HORVU7Hr1G070270.4 |
High | No | 767 | OG0002166 | Get ORF Coding potential... Type: noncoding Potential: -0.935 Folding energies... MFEI: -26.962 AMFE: -0.627 GC content %: 43.025 | |
| Hvulgare_HORVU7Hr1G070270.5 HORVU7Hr1G070270.5 |
Low | No | 2669 | OG0013424 | Get ORF Coding potential... Type: noncoding Potential: -1.162 Folding energies... MFEI: -28.767 AMFE: -0.643 GC content %: 44.736 | |
| Hvulgare_HORVU7Hr1G070270.6 HORVU7Hr1G070270.6 |
Low | No | 3349 | OG0002167 | Get ORF Coding potential... Type: noncoding Potential: -1.184 Folding energies... MFEI: -27.955 AMFE: -0.659 GC content %: 42.401 | |
| Hvulgare_HORVU7Hr1G070270.7 HORVU7Hr1G070270.7 |
Low | No | 3235 | OG0002167 | Get ORF Coding potential... Type: noncoding Potential: -1.181 Folding energies... MFEI: -28.151 AMFE: -0.660 GC content %: 42.628 | |
| Hvulgare_HORVU7Hr1G070270.8 HORVU7Hr1G070270.8 |
Low | No | 2771 | OG0013424 | Get ORF Coding potential... Type: noncoding Potential: -1.159 Folding energies... MFEI: -28.805 AMFE: -0.647 GC content %: 44.497 | |
| Hvulgare_HORVU7Hr1G070270.9 HORVU7Hr1G070270.9 |
Low | No | 2781 | OG0013424 | Get ORF Coding potential... Type: noncoding Potential: -1.166 Folding energies... MFEI: -28.720 AMFE: -0.646 GC content %: 44.480 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Hvulgare_HORVU7Hr1G070270.6 | RepBase (RepeatMasker) | 2014-01-31 | DNA/PIF-Harbinger | |
| Hvulgare_HORVU7Hr1G070270.11 | RepBase (RepeatMasker) | 2014-01-31 | DNA/PIF-Harbinger | |
| Hvulgare_HORVU7Hr1G070270.7 | RepBase (RepeatMasker) | 2014-01-31 | DNA/PIF-Harbinger | |
| Hvulgare_HORVU7Hr1G070270.12 | RepBase (RepeatMasker) | 2014-01-31 | DNA/PIF-Harbinger | |
| Hvulgare_HORVU7Hr1G070270.8 | RepBase (RepeatMasker) | 2014-01-31 | DNA/PIF-Harbinger | |
| Hvulgare_HORVU7Hr1G070270.13 | RepBase (RepeatMasker) | 2014-01-31 | DNA/PIF-Harbinger | |
| Hvulgare_HORVU7Hr1G070270.9 | RepBase (RepeatMasker) | 2014-01-31 | DNA/PIF-Harbinger | |
| Hvulgare_HORVU7Hr1G070270.14 | RepBase (RepeatMasker) | 2014-01-31 | DNA/PIF-Harbinger | |
| Hvulgare_HORVU7Hr1G070270.5 | RepBase (RepeatMasker) | 2014-01-31 | DNA/PIF-Harbinger | |
| Hvulgare_HORVU7Hr1G070270.10 | RepBase (RepeatMasker) | 2014-01-31 | DNA/PIF-Harbinger |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
