Hvulgare HORVU7Hr1G074550
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU7Hr1G074550 [ HORVU7Hr1G074550] |
chr7H | 427029429 | 427032480 | r1 | Hordeum vulgare (Phytozome 13) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU7Hr1G074550.1 HORVU7Hr1G074550.1 |
Low | No | 830 | OG0004171 | Get ORF Coding potential... Type: noncoding Potential: -0.453 Folding energies... MFEI: -34.711 AMFE: -0.613 GC content %: 56.627 | |
| Hvulgare_HORVU7Hr1G074550.10 HORVU7Hr1G074550.10 |
Low | No | 682 | OG0049533 | Get ORF Coding potential... Type: noncoding Potential: -0.750 Folding energies... MFEI: -38.622 AMFE: -0.611 GC content %: 63.196 | |
| Hvulgare_HORVU7Hr1G074550.12 HORVU7Hr1G074550.12 |
Low | No | 916 | OG0004171 | Get ORF Coding potential... Type: noncoding Potential: -0.255 Folding energies... MFEI: -34.945 AMFE: -0.655 GC content %: 53.384 | |
| Hvulgare_HORVU7Hr1G074550.15 HORVU7Hr1G074550.15 |
High | No | 553 | OG0006015 | Get ORF Coding potential... Type: noncoding Potential: -0.915 Folding energies... MFEI: -26.854 AMFE: -0.637 GC content %: 42.134 | |
| Hvulgare_HORVU7Hr1G074550.16 HORVU7Hr1G074550.16 |
High | No | 260 | OG0049534 | Get ORF Coding potential... Type: noncoding Potential: -0.778 Folding energies... MFEI: -31.000 AMFE: -0.620 GC content %: 50.000 | |
| Hvulgare_HORVU7Hr1G074550.17 HORVU7Hr1G074550.17 |
Low | Yes | 1263 | OG0049535 | Get ORF Coding potential... Type: noncoding Potential: -1.160 Folding energies... MFEI: -29.414 AMFE: -0.724 GC content %: 40.618 | |
| Hvulgare_HORVU7Hr1G074550.18 HORVU7Hr1G074550.18 |
High | No | 463 | OG0006015 | Get ORF Coding potential... Type: noncoding Potential: -1.015 Folding energies... MFEI: -27.127 AMFE: -0.651 GC content %: 41.685 | |
| Hvulgare_HORVU7Hr1G074550.19 HORVU7Hr1G074550.19 |
High | No | 489 | OG0006015 | Get ORF Coding potential... Type: noncoding Potential: -1.029 Folding energies... MFEI: -26.912 AMFE: -0.655 GC content %: 41.104 | |
| Hvulgare_HORVU7Hr1G074550.2 HORVU7Hr1G074550.2 |
Low | No | 827 | OG0004171 | Get ORF Coding potential... Type: noncoding Potential: -0.446 Folding energies... MFEI: -34.740 AMFE: -0.613 GC content %: 56.711 | |
| Hvulgare_HORVU7Hr1G074550.4 HORVU7Hr1G074550.4 |
Low | No | 676 | OG0019590 | Get ORF Coding potential... Type: noncoding Potential: -0.523 Folding energies... MFEI: -37.352 AMFE: -0.620 GC content %: 60.207 | |
| Hvulgare_HORVU7Hr1G074550.9 HORVU7Hr1G074550.9 |
Low | No | 585 | OG0019590 | Get ORF Coding potential... Type: noncoding Potential: -0.513 Folding energies... MFEI: -38.376 AMFE: -0.622 GC content %: 61.709 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Hvulgare_HORVU7Hr1G074550.4 | SwissProt | 2021-04-01 | O32107 | 1.09e-10 |
| Hvulgare_HORVU7Hr1G074550.9 | SwissProt | 2021-04-01 | O32107 | 1.34e-10 |
| Hvulgare_HORVU7Hr1G074550.1 | SwissProt | 2021-04-01 | O32107 | 4.98e-10 |
| Hvulgare_HORVU7Hr1G074550.17 | Rfam | 14.6 | MIR1122 | 4.4e-14 |
| Hvulgare_HORVU7Hr1G074550.10 | SwissProt | 2021-04-01 | O32107 | 3.63e-4 |
| Hvulgare_HORVU7Hr1G074550.17 | RepBase (RepeatMasker) | 2014-01-31 | DNA/TcMar-Stowaway | |
| Hvulgare_HORVU7Hr1G074550.12 | SwissProt | 2021-04-01 | O32107 | 3.4e-10 |
| Hvulgare_HORVU7Hr1G074550.2 | SwissProt | 2021-04-01 | O32107 | 1.07e-10 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
