GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Hvulgare_HORVU7Hr1G076900 [ HORVU7Hr1G076900]	chr7H	449890997	449895547	r1	Hordeum vulgare (Phytozome 13)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Hvulgare_HORVU7Hr1G076900.10 HORVU7Hr1G076900.10	Low	No	1010	OG0001935		Get ORF Coding potential... Type: coding Potential: 0.443 Folding energies... MFEI: -26.861 AMFE: -0.638 GC content %: 42.079
Hvulgare_HORVU7Hr1G076900.5 HORVU7Hr1G076900.5	Low	No	1492	OG0001935		Get ORF Coding potential... Type: noncoding Potential: -0.151 Folding energies... MFEI: -28.458 AMFE: -0.649 GC content %: 43.834

Matches to external databases

The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias	Database	Version	Hit	Evalue
Hvulgare_HORVU7Hr1G076900.5	SwissProt	2021-04-01	Q6DEY1	2.28e-6

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).