Hvulgare HORVU7Hr1G079510
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU7Hr1G079510 [ HORVU7Hr1G079510] |
chr7H | 469375538 | 469380413 | r1 | Hordeum vulgare (Phytozome 13) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU7Hr1G079510.1 HORVU7Hr1G079510.1 |
Low | Yes | 2186 | OG0013361 | Get ORF Coding potential... Type: noncoding Potential: -1.080 Folding energies... MFEI: -26.720 AMFE: -0.646 GC content %: 41.354 | |
| Hvulgare_HORVU7Hr1G079510.12 HORVU7Hr1G079510.12 |
High | No | 384 | OG0049638 | Get ORF Coding potential... Type: noncoding Potential: -1.206 Folding energies... MFEI: -33.021 AMFE: -0.678 GC content %: 48.698 | |
| Hvulgare_HORVU7Hr1G079510.13 HORVU7Hr1G079510.13 |
High | No | 1778 | OG0013362 | Get ORF Coding potential... Type: noncoding Potential: -1.269 Folding energies... MFEI: -27.947 AMFE: -0.607 GC content %: 46.063 | |
| Hvulgare_HORVU7Hr1G079510.14 HORVU7Hr1G079510.14 |
High | No | 1450 | OG0013362 | Get ORF Coding potential... Type: noncoding Potential: -1.302 Folding energies... MFEI: -25.441 AMFE: -0.610 GC content %: 41.724 | |
| Hvulgare_HORVU7Hr1G079510.15 HORVU7Hr1G079510.15 |
High | No | 665 | OG0049639 | Get ORF Coding potential... Type: noncoding Potential: -1.269 Folding energies... MFEI: -33.444 AMFE: -0.666 GC content %: 50.226 | |
| Hvulgare_HORVU7Hr1G079510.16 HORVU7Hr1G079510.16 |
High | No | 354 | OG0049640 | Get ORF Coding potential... Type: noncoding Potential: -0.585 Folding energies... MFEI: -43.390 AMFE: -0.612 GC content %: 70.904 | |
| Hvulgare_HORVU7Hr1G079510.2 HORVU7Hr1G079510.2 |
Low | Yes | 456 | OG0007113 | Get ORF Coding potential... Type: noncoding Potential: -0.643 Folding energies... MFEI: -27.851 AMFE: -0.570 GC content %: 48.904 | |
| Hvulgare_HORVU7Hr1G079510.3 HORVU7Hr1G079510.3 |
Low | No | 1766 | OG0013361 | Get ORF Coding potential... Type: noncoding Potential: -1.063 Folding energies... MFEI: -26.438 AMFE: -0.633 GC content %: 41.789 | |
| Hvulgare_HORVU7Hr1G079510.5 HORVU7Hr1G079510.5 |
Low | No | 4110 | OG0049641 | Get ORF Coding potential... Type: noncoding Potential: -1.022 Folding energies... MFEI: -28.701 AMFE: -0.657 GC content %: 43.674 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Hvulgare_HORVU7Hr1G079510.2 | Rfam | 14.6 | MIR1122 | 1.1e-4 |
| Hvulgare_HORVU7Hr1G079510.1 | RepBase (RepeatMasker) | 2014-01-31 | DNA/PiggyBac | |
| Hvulgare_HORVU7Hr1G079510.3 | RepBase (RepeatMasker) | 2014-01-31 | DNA/PiggyBac | |
| Hvulgare_HORVU7Hr1G079510.5 | RepBase (RepeatMasker) | 2014-01-31 | DNA/PiggyBac | |
| Hvulgare_HORVU7Hr1G079510.1 | Rfam | 14.6 | MIR1122 | 5.3e-4 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
