Hvulgare HORVU7Hr1G079530

From GreeNC


Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Assembly Species Details

Hvulgare_HORVU7Hr1G079530
[ HORVU7Hr1G079530]
chr7H 469387062 469392630 r1 Hordeum vulgare (Phytozome 13)
Coding?
Yes


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Orthologous group Sequence Details

Hvulgare_HORVU7Hr1G079530.1
HORVU7Hr1G079530.1
High No 731 OG0049642
Coding potential...
Type: noncoding Potential: -0.694
Folding energies...
MFEI: -28.085 AMFE: -0.547
GC content
%: 51.300
Hvulgare_HORVU7Hr1G079530.2
HORVU7Hr1G079530.2
High No 281 OG0193314
Coding potential...
Type: noncoding Potential: -0.865
Folding energies...
MFEI: -21.744 AMFE: -0.536
GC content
%: 40.569
Hvulgare_HORVU7Hr1G079530.4
HORVU7Hr1G079530.4
High No 276 OG0003363
Coding potential...
Type: noncoding Potential: -0.900
Folding energies...
MFEI: -23.696 AMFE: -0.467
GC content
%: 50.725


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

Hvulgare_HORVU7Hr1G079530.png