Hvulgare HORVU7Hr1G093120
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU7Hr1G093120 [ HORVU7Hr1G093120] |
chr7H | 569836992 | 569842015 | r1 | Hordeum vulgare (Phytozome 13) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU7Hr1G093120.1 HORVU7Hr1G093120.1 |
Low | No | 1491 | OG0049911 | Get ORF Coding potential... Type: noncoding Potential: -1.318 Folding energies... MFEI: -30.946 AMFE: -0.671 GC content %: 46.144 | |
| Hvulgare_HORVU7Hr1G093120.10 HORVU7Hr1G093120.10 |
Low | No | 317 | OG0049912 | Get ORF Coding potential... Type: noncoding Potential: -0.764 Folding energies... MFEI: -44.732 AMFE: -0.660 GC content %: 67.823 | |
| Hvulgare_HORVU7Hr1G093120.2 HORVU7Hr1G093120.2 |
Low | No | 1008 | OG0049913 | Get ORF Coding potential... Type: noncoding Potential: -1.269 Folding energies... MFEI: -36.558 AMFE: -0.689 GC content %: 53.075 | |
| Hvulgare_HORVU7Hr1G093120.3 HORVU7Hr1G093120.3 |
Low | No | 939 | OG0049914 | Get ORF Coding potential... Type: noncoding Potential: -1.072 Folding energies... MFEI: -36.688 AMFE: -0.689 GC content %: 53.248 | |
| Hvulgare_HORVU7Hr1G093120.6 HORVU7Hr1G093120.6 |
Low | No | 717 | OG0049915 | Get ORF Coding potential... Type: noncoding Potential: -0.569 Folding energies... MFEI: -36.290 AMFE: -0.620 GC content %: 58.577 | |
| Hvulgare_HORVU7Hr1G093120.7 HORVU7Hr1G093120.7 |
Low | No | 617 | OG0049916 | Get ORF Coding potential... Type: noncoding Potential: -0.744 Folding energies... MFEI: -36.775 AMFE: -0.607 GC content %: 60.616 | |
| Hvulgare_HORVU7Hr1G093120.8 HORVU7Hr1G093120.8 |
Low | No | 714 | OG0049917 | Get ORF Coding potential... Type: noncoding Potential: -0.859 Folding energies... MFEI: -33.543 AMFE: -0.570 GC content %: 58.824 | |
| Hvulgare_HORVU7Hr1G093120.9 HORVU7Hr1G093120.9 |
Low | No | 305 | OG0049918 | Get ORF Coding potential... Type: noncoding Potential: -0.708 Folding energies... MFEI: -43.705 AMFE: -0.644 GC content %: 67.869 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Hvulgare_HORVU7Hr1G093120.2 | SwissProt | 2021-04-01 | Q1G3Q4 | 2.53e-10 |
| Hvulgare_HORVU7Hr1G093120.1 | RepBase (RepeatMasker) | 2014-01-31 | DNA/hAT-Charlie; LINE/L2; LTR/Gypsy | |
| Hvulgare_HORVU7Hr1G093120.3 | SwissProt | 2021-04-01 | Q1G3Q4 | 1.89e-8 |
| Hvulgare_HORVU7Hr1G093120.2 | RepBase (RepeatMasker) | 2014-01-31 | DNA/hAT-Charlie; LINE/L2; LTR/Gypsy | |
| Hvulgare_HORVU7Hr1G093120.6 | SwissProt | 2021-04-01 | Q1G3Q4 | 1.11e-8 |
| Hvulgare_HORVU7Hr1G093120.3 | RepBase (RepeatMasker) | 2014-01-31 | DNA/hAT-Charlie; LINE/L2; LTR/Gypsy | |
| Hvulgare_HORVU7Hr1G093120.7 | SwissProt | 2021-04-01 | Q1G3Q4 | 6.37e-9 |
| Hvulgare_HORVU7Hr1G093120.8 | SwissProt | 2021-04-01 | Q1G3Q4 | 6.93e-6 |
| Hvulgare_HORVU7Hr1G093120.10 | SwissProt | 2021-04-01 | Q1G3Q4 | 1.91e-6 |
| Hvulgare_HORVU7Hr1G093120.9 | SwissProt | 2021-04-01 | Q1G3Q4 | 4.03e-7 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
