GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Hvulgare_HORVU7Hr1G097180 [ HORVU7Hr1G097180]	chr7H	591358417	591359424	r1	Hordeum vulgare (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Hvulgare_HORVU7Hr1G097180.1 HORVU7Hr1G097180.1	High	No	605	OG0003368		Get ORF Coding potential... Type: noncoding Potential: -0.254 Folding energies... MFEI: -35.388 AMFE: -0.558 GC content %: 63.471
Hvulgare_HORVU7Hr1G097180.2 HORVU7Hr1G097180.2	High	No	632	OG0003368		Get ORF Coding potential... Type: noncoding Potential: -0.285 Folding energies... MFEI: -34.335 AMFE: -0.540 GC content %: 63.608
Hvulgare_HORVU7Hr1G097180.3 HORVU7Hr1G097180.3	High	No	664	OG0003368		Get ORF Coding potential... Type: noncoding Potential: -0.386 Folding energies... MFEI: -34.202 AMFE: -0.564 GC content %: 60.693
Hvulgare_HORVU7Hr1G097180.4 HORVU7Hr1G097180.4	High	No	231	OG0001403		Get ORF Coding potential... Type: noncoding Potential: -0.834 Folding energies... MFEI: -26.104 AMFE: -0.538 GC content %: 48.485

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).