Hvulgare HORVU7Hr1G099800
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU7Hr1G099800 [ HORVU7Hr1G099800] |
chr7H | 602554620 | 602635443 | r1 | Hordeum vulgare (Phytozome 13) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU7Hr1G099800.12 HORVU7Hr1G099800.12 |
Low | No | 1079 | OG0006025 | Get ORF Coding potential... Type: noncoding Potential: -0.563 Folding energies... MFEI: -32.641 AMFE: -0.608 GC content %: 53.661 | |
| Hvulgare_HORVU7Hr1G099800.15 HORVU7Hr1G099800.15 |
Low | No | 881 | OG0050069 | Get ORF Coding potential... Type: noncoding Potential: -0.491 Folding energies... MFEI: -36.288 AMFE: -0.639 GC content %: 56.754 | |
| Hvulgare_HORVU7Hr1G099800.17 HORVU7Hr1G099800.17 |
Low | No | 2507 | OG0013390 | Get ORF Coding potential... Type: noncoding Potential: -0.695 Folding energies... MFEI: -28.189 AMFE: -0.640 GC content %: 44.077 | |
| Hvulgare_HORVU7Hr1G099800.19 HORVU7Hr1G099800.19 |
Low | No | 1046 | OG0050070 | Get ORF Coding potential... Type: noncoding Potential: -0.535 Folding energies... MFEI: -34.962 AMFE: -0.642 GC content %: 54.493 | |
| Hvulgare_HORVU7Hr1G099800.22 HORVU7Hr1G099800.22 |
Low | No | 1198 | OG0050071 | Get ORF Coding potential... Type: noncoding Potential: -0.588 Folding energies... MFEI: -29.424 AMFE: -0.641 GC content %: 45.910 | |
| Hvulgare_HORVU7Hr1G099800.23 HORVU7Hr1G099800.23 |
Low | No | 2332 | OG0013390 | Get ORF Coding potential... Type: noncoding Potential: -0.685 Folding energies... MFEI: -27.213 AMFE: -0.649 GC content %: 41.938 | |
| Hvulgare_HORVU7Hr1G099800.25 HORVU7Hr1G099800.25 |
High | No | 780 | OG0013391 | Get ORF Coding potential... Type: noncoding Potential: -0.457 Folding energies... MFEI: -32.167 AMFE: -0.637 GC content %: 50.513 | |
| Hvulgare_HORVU7Hr1G099800.26 HORVU7Hr1G099800.26 |
High | No | 740 | OG0006025 | Get ORF Coding potential... Type: noncoding Potential: -0.464 Folding energies... MFEI: -32.405 AMFE: -0.639 GC content %: 50.676 | |
| Hvulgare_HORVU7Hr1G099800.27 HORVU7Hr1G099800.27 |
High | No | 843 | OG0013392 | Get ORF Coding potential... Type: noncoding Potential: -0.479 Folding energies... MFEI: -34.104 AMFE: -0.658 GC content %: 51.839 | |
| Hvulgare_HORVU7Hr1G099800.28 HORVU7Hr1G099800.28 |
High | No | 732 | OG0006025 | Get ORF Coding potential... Type: noncoding Potential: -0.461 Folding energies... MFEI: -32.418 AMFE: -0.629 GC content %: 51.503 | |
| Hvulgare_HORVU7Hr1G099800.29 HORVU7Hr1G099800.29 |
High | No | 831 | OG0013392 | Get ORF Coding potential... Type: noncoding Potential: -0.475 Folding energies... MFEI: -34.813 AMFE: -0.671 GC content %: 51.865 | |
| Hvulgare_HORVU7Hr1G099800.30 HORVU7Hr1G099800.30 |
High | No | 745 | OG0013391 | Get ORF Coding potential... Type: noncoding Potential: -0.444 Folding energies... MFEI: -32.966 AMFE: -0.646 GC content %: 51.007 | |
| Hvulgare_HORVU7Hr1G099800.31 HORVU7Hr1G099800.31 |
Low | No | 1047 | OG0050072 | Get ORF Coding potential... Type: noncoding Potential: -0.680 Folding energies... MFEI: -30.850 AMFE: -0.643 GC content %: 47.947 | |
| Hvulgare_HORVU7Hr1G099800.33 HORVU7Hr1G099800.33 |
Low | No | 1364 | OG0050073 | Get ORF Coding potential... Type: noncoding Potential: -0.615 Folding energies... MFEI: -28.805 AMFE: -0.650 GC content %: 44.282 | |
| Hvulgare_HORVU7Hr1G099800.34 HORVU7Hr1G099800.34 |
High | No | 607 | OG0050074 | Get ORF Coding potential... Type: noncoding Potential: -0.166 Folding energies... MFEI: -33.245 AMFE: -0.651 GC content %: 51.071 | |
| Hvulgare_HORVU7Hr1G099800.35 HORVU7Hr1G099800.35 |
High | No | 698 | OG0050075 | Get ORF Coding potential... Type: noncoding Potential: -0.596 Folding energies... MFEI: -30.831 AMFE: -0.656 GC content %: 46.991 | |
| Hvulgare_HORVU7Hr1G099800.7 HORVU7Hr1G099800.7 |
Low | No | 1711 | OG0050076 | Get ORF Coding potential... Type: noncoding Potential: -0.631 Folding energies... MFEI: -30.169 AMFE: -0.633 GC content %: 47.633 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Hvulgare_HORVU7Hr1G099800.12 | SwissProt | 2021-04-01 | Q9SF23 | 9.21e-9 |
| Hvulgare_HORVU7Hr1G099800.22 | RepBase (RepeatMasker) | 2014-01-31 | LINE/L1 | |
| Hvulgare_HORVU7Hr1G099800.15 | SwissProt | 2021-04-01 | Q9SF23 | 3.54e-8 |
| Hvulgare_HORVU7Hr1G099800.23 | RepBase (RepeatMasker) | 2014-01-31 | LINE/L1 | |
| Hvulgare_HORVU7Hr1G099800.17 | SwissProt | 2021-04-01 | Q9SF23 | 2.35e-6 |
| Hvulgare_HORVU7Hr1G099800.31 | RepBase (RepeatMasker) | 2014-01-31 | LINE/L1 | |
| Hvulgare_HORVU7Hr1G099800.19 | SwissProt | 2021-04-01 | Q9SF23 | 1.87e-6 |
| Hvulgare_HORVU7Hr1G099800.33 | RepBase (RepeatMasker) | 2014-01-31 | LINE/L1 | |
| Hvulgare_HORVU7Hr1G099800.7 | SwissProt | 2021-04-01 | Q9SF23 | 1.17e-8 |
| Hvulgare_HORVU7Hr1G099800.7 | RepBase (RepeatMasker) | 2014-01-31 | LINE/L1 |
... further results
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
