Hvulgare HORVU7Hr1G104590
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU7Hr1G104590 [ HORVU7Hr1G104590] |
chr7H | 614798394 | 614812416 | r1 | Hordeum vulgare (Phytozome 13) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU7Hr1G104590.10 HORVU7Hr1G104590.10 |
Low | No | 5905 | OG0050144 | Get ORF Coding potential... Type: noncoding Potential: -0.452 Folding energies... MFEI: -33.067 AMFE: -0.690 GC content %: 47.942 | |
| Hvulgare_HORVU7Hr1G104590.11 HORVU7Hr1G104590.11 |
Low | No | 6195 | OG0002171 | Get ORF Coding potential... Type: noncoding Potential: -0.459 Folding energies... MFEI: -32.704 AMFE: -0.689 GC content %: 47.458 | |
| Hvulgare_HORVU7Hr1G104590.12 HORVU7Hr1G104590.12 |
Low | No | 5974 | OG0000645 | Get ORF Coding potential... Type: noncoding Potential: -0.469 Folding energies... MFEI: -33.038 AMFE: -0.688 GC content %: 48.042 | |
| Hvulgare_HORVU7Hr1G104590.13 HORVU7Hr1G104590.13 |
Low | No | 6214 | OG0002171 | Get ORF Coding potential... Type: noncoding Potential: -0.459 Folding energies... MFEI: -32.724 AMFE: -0.689 GC content %: 47.506 | |
| Hvulgare_HORVU7Hr1G104590.14 HORVU7Hr1G104590.14 |
Low | No | 5975 | OG0000645 | Get ORF Coding potential... Type: noncoding Potential: -0.438 Folding energies... MFEI: -33.039 AMFE: -0.688 GC content %: 48.050 | |
| Hvulgare_HORVU7Hr1G104590.15 HORVU7Hr1G104590.15 |
Low | No | 6243 | OG0002171 | Get ORF Coding potential... Type: noncoding Potential: -0.470 Folding energies... MFEI: -32.797 AMFE: -0.688 GC content %: 47.653 | |
| Hvulgare_HORVU7Hr1G104590.16 HORVU7Hr1G104590.16 |
Low | No | 6073 | OG0000645 | Get ORF Coding potential... Type: noncoding Potential: -0.470 Folding energies... MFEI: -33.458 AMFE: -0.689 GC content %: 48.543 | |
| Hvulgare_HORVU7Hr1G104590.17 HORVU7Hr1G104590.17 |
Low | No | 5939 | OG0050145 | Get ORF Coding potential... Type: noncoding Potential: -0.458 Folding energies... MFEI: -33.223 AMFE: -0.690 GC content %: 48.173 | |
| Hvulgare_HORVU7Hr1G104590.18 HORVU7Hr1G104590.18 |
Low | No | 6002 | OG0050146 | Get ORF Coding potential... Type: noncoding Potential: -0.446 Folding energies... MFEI: -33.156 AMFE: -0.688 GC content %: 48.167 | |
| Hvulgare_HORVU7Hr1G104590.19 HORVU7Hr1G104590.19 |
Low | No | 6000 | OG0000645 | Get ORF Coding potential... Type: noncoding Potential: -0.469 Folding energies... MFEI: -33.200 AMFE: -0.689 GC content %: 48.167 | |
| Hvulgare_HORVU7Hr1G104590.20 HORVU7Hr1G104590.20 |
Low | No | 6204 | OG0002171 | Get ORF Coding potential... Type: noncoding Potential: -0.459 Folding energies... MFEI: -32.663 AMFE: -0.688 GC content %: 47.453 | |
| Hvulgare_HORVU7Hr1G104590.21 HORVU7Hr1G104590.21 |
Low | No | 5964 | OG0000645 | Get ORF Coding potential... Type: noncoding Potential: -0.469 Folding energies... MFEI: -33.006 AMFE: -0.688 GC content %: 47.988 | |
| Hvulgare_HORVU7Hr1G104590.22 HORVU7Hr1G104590.22 |
Low | No | 6048 | OG0000645 | Get ORF Coding potential... Type: noncoding Potential: -0.469 Folding energies... MFEI: -33.335 AMFE: -0.688 GC content %: 48.446 | |
| Hvulgare_HORVU7Hr1G104590.23 HORVU7Hr1G104590.23 |
Low | No | 5998 | OG0002171 | Get ORF Coding potential... Type: noncoding Potential: -0.458 Folding energies... MFEI: -32.311 AMFE: -0.687 GC content %: 47.016 | |
| Hvulgare_HORVU7Hr1G104590.24 HORVU7Hr1G104590.24 |
Low | No | 5859 | OG0000645 | Get ORF Coding potential... Type: noncoding Potential: -0.469 Folding energies... MFEI: -32.830 AMFE: -0.690 GC content %: 47.602 | |
| Hvulgare_HORVU7Hr1G104590.8 HORVU7Hr1G104590.8 |
Low | No | 6050 | OG0000645 | Get ORF Coding potential... Type: noncoding Potential: -0.469 Folding energies... MFEI: -33.360 AMFE: -0.689 GC content %: 48.446 | |
| Hvulgare_HORVU7Hr1G104590.9 HORVU7Hr1G104590.9 |
Low | No | 6090 | OG0000645 | Get ORF Coding potential... Type: noncoding Potential: -0.470 Folding energies... MFEI: -33.455 AMFE: -0.689 GC content %: 48.571 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Hvulgare_HORVU7Hr1G104590.11 | RepBase (RepeatMasker) | 2014-01-31 | DNA/PIF-Harbinger; LTR/Copia | |
| Hvulgare_HORVU7Hr1G104590.22 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Copia | |
| Hvulgare_HORVU7Hr1G104590.17 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Copia | |
| Hvulgare_HORVU7Hr1G104590.12 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Copia | |
| Hvulgare_HORVU7Hr1G104590.23 | RepBase (RepeatMasker) | 2014-01-31 | DNA/PIF-Harbinger; LTR/Copia | |
| Hvulgare_HORVU7Hr1G104590.18 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Copia | |
| Hvulgare_HORVU7Hr1G104590.13 | RepBase (RepeatMasker) | 2014-01-31 | DNA/PIF-Harbinger; LTR/Copia | |
| Hvulgare_HORVU7Hr1G104590.24 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Copia | |
| Hvulgare_HORVU7Hr1G104590.19 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Copia | |
| Hvulgare_HORVU7Hr1G104590.14 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Copia |
... further results
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
