Hvulgare HORVU7Hr1G110610
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU7Hr1G110610 [ HORVU7Hr1G110610] |
chr7H | 630855516 | 630874370 | r1 | Hordeum vulgare (Phytozome 13) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU7Hr1G110610.1 HORVU7Hr1G110610.1 |
Low | No | 714 | OG0013403 | Get ORF Coding potential... Type: noncoding Potential: -0.521 Folding energies... MFEI: -37.619 AMFE: -0.616 GC content %: 61.064 | |
| Hvulgare_HORVU7Hr1G110610.2 HORVU7Hr1G110610.2 |
Low | No | 697 | OG0013403 | Get ORF Coding potential... Type: noncoding Potential: -0.484 Folding energies... MFEI: -37.747 AMFE: -0.616 GC content %: 61.263 | |
| Hvulgare_HORVU7Hr1G110610.3 HORVU7Hr1G110610.3 |
Low | No | 856 | OG0050252 | Get ORF Coding potential... Type: noncoding Potential: -0.570 Folding energies... MFEI: -33.096 AMFE: -0.691 GC content %: 47.897 | |
| Hvulgare_HORVU7Hr1G110610.4 HORVU7Hr1G110610.4 |
High | No | 289 | OG0050253 | Get ORF Coding potential... Type: noncoding Potential: -0.899 Folding energies... MFEI: -41.799 AMFE: -0.660 GC content %: 63.322 | |
| Hvulgare_HORVU7Hr1G110610.5 HORVU7Hr1G110610.5 |
High | No | 470 | OG0193361 | Get ORF Coding potential... Type: noncoding Potential: -1.201 Folding energies... MFEI: -24.851 AMFE: -0.599 GC content %: 41.489 | |
| Hvulgare_HORVU7Hr1G110610.6 HORVU7Hr1G110610.6 |
Low | No | 1252 | OG0050254 | Get ORF Coding potential... Type: noncoding Potential: -1.083 Folding energies... MFEI: -26.230 AMFE: -0.669 GC content %: 39.217 | |
| Hvulgare_HORVU7Hr1G110610.7 HORVU7Hr1G110610.7 |
Low | No | 493 | OG0050255 | Get ORF Coding potential... Type: noncoding Potential: -0.937 Folding energies... MFEI: -22.657 AMFE: -0.588 GC content %: 38.540 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Hvulgare_HORVU7Hr1G110610.3 | SwissProt | 2021-04-01 | Q5ZLH4 | 9.49e-7 |
| Hvulgare_HORVU7Hr1G110610.6 | SwissProt | 2021-04-01 | Q5R8X3 | 5.88e-7 |
| Hvulgare_HORVU7Hr1G110610.7 | SwissProt | 2021-04-01 | Q5ZLH4 | 9.68e-8 |
| Hvulgare_HORVU7Hr1G110610.3 | RepBase (RepeatMasker) | 2014-01-31 | LTR | |
| Hvulgare_HORVU7Hr1G110610.1 | SwissProt | 2021-04-01 | Q8CIB6 | 4.46e-7 |
| Hvulgare_HORVU7Hr1G110610.7 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Hvulgare_HORVU7Hr1G110610.2 | SwissProt | 2021-04-01 | Q8CIB6 | 3.99e-7 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
