Hvulgare HORVU7Hr1G114510
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU7Hr1G114510 [ HORVU7Hr1G114510] |
chr7H | 639657240 | 639704912 | r1 | Hordeum vulgare (Phytozome 13) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU7Hr1G114510.15 HORVU7Hr1G114510.15 |
High | No | 1664 | OG0050310 | Get ORF Coding potential... Type: noncoding Potential: -0.974 Folding energies... MFEI: -34.111 AMFE: -0.664 GC content %: 51.382 | |
| Hvulgare_HORVU7Hr1G114510.26 HORVU7Hr1G114510.26 |
High | No | 1394 | OG0050311 | Get ORF Coding potential... Type: noncoding Potential: -1.146 Folding energies... MFEI: -34.247 AMFE: -0.618 GC content %: 55.452 | |
| Hvulgare_HORVU7Hr1G114510.28 HORVU7Hr1G114510.28 |
High | No | 1057 | OG0050312 | Get ORF Coding potential... Type: noncoding Potential: -0.858 Folding energies... MFEI: -34.153 AMFE: -0.655 GC content %: 52.129 | |
| Hvulgare_HORVU7Hr1G114510.32 HORVU7Hr1G114510.32 |
High | No | 1239 | OG0050313 | Get ORF Coding potential... Type: noncoding Potential: -0.867 Folding energies... MFEI: -34.084 AMFE: -0.651 GC content %: 52.381 | |
| Hvulgare_HORVU7Hr1G114510.33 HORVU7Hr1G114510.33 |
High | No | 1263 | OG0050314 | Get ORF Coding potential... Type: noncoding Potential: -0.638 Folding energies... MFEI: -35.368 AMFE: -0.664 GC content %: 53.286 | |
| Hvulgare_HORVU7Hr1G114510.34 HORVU7Hr1G114510.34 |
High | No | 2016 | OG0050315 | Get ORF Coding potential... Type: noncoding Potential: -0.910 Folding energies... MFEI: -34.648 AMFE: -0.692 GC content %: 50.099 | |
| Hvulgare_HORVU7Hr1G114510.35 HORVU7Hr1G114510.35 |
High | No | 1237 | OG0050316 | Get ORF Coding potential... Type: noncoding Potential: -0.656 Folding energies... MFEI: -34.899 AMFE: -0.673 GC content %: 51.819 | |
| Hvulgare_HORVU7Hr1G114510.36 HORVU7Hr1G114510.36 |
High | No | 899 | OG0050317 | Get ORF Coding potential... Type: noncoding Potential: -0.769 Folding energies... MFEI: -34.372 AMFE: -0.653 GC content %: 52.614 | |
| Hvulgare_HORVU7Hr1G114510.37 HORVU7Hr1G114510.37 |
High | No | 297 | OG0019599 | Get ORF Coding potential... Type: noncoding Potential: -0.283 Folding energies... MFEI: -43.670 AMFE: -0.665 GC content %: 65.657 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
