Hvulgare HORVU7Hr1G119520
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU7Hr1G119520 [ HORVU7Hr1G119520] |
chr7H | 649788726 | 649793002 | r1 | Hordeum vulgare (Phytozome 13) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU7Hr1G119520.19 HORVU7Hr1G119520.19 |
Low | No | 2245 | OG0050392 | Get ORF Coding potential... Type: noncoding Potential: -0.827 Folding energies... MFEI: -30.873 AMFE: -0.631 GC content %: 48.909 | |
| Hvulgare_HORVU7Hr1G119520.21 HORVU7Hr1G119520.21 |
High | No | 1269 | OG0013416 | Get ORF Coding potential... Type: noncoding Potential: -0.712 Folding energies... MFEI: -32.009 AMFE: -0.651 GC content %: 49.173 | |
| Hvulgare_HORVU7Hr1G119520.22 HORVU7Hr1G119520.22 |
High | No | 986 | OG0013417 | Get ORF Coding potential... Type: noncoding Potential: -0.661 Folding energies... MFEI: -32.525 AMFE: -0.641 GC content %: 50.710 | |
| Hvulgare_HORVU7Hr1G119520.23 HORVU7Hr1G119520.23 |
High | No | 934 | OG0050393 | Get ORF Coding potential... Type: noncoding Potential: -0.693 Folding energies... MFEI: -31.660 AMFE: -0.636 GC content %: 49.786 | |
| Hvulgare_HORVU7Hr1G119520.24 HORVU7Hr1G119520.24 |
High | No | 2913 | OG0013418 | Get ORF Coding potential... Type: noncoding Potential: -0.851 Folding energies... MFEI: -27.024 AMFE: -0.659 GC content %: 40.989 | |
| Hvulgare_HORVU7Hr1G119520.25 HORVU7Hr1G119520.25 |
High | No | 1450 | OG0050394 | Get ORF Coding potential... Type: noncoding Potential: -0.736 Folding energies... MFEI: -30.903 AMFE: -0.652 GC content %: 47.379 | |
| Hvulgare_HORVU7Hr1G119520.26 HORVU7Hr1G119520.26 |
High | No | 1369 | OG0013417 | Get ORF Coding potential... Type: noncoding Potential: -0.731 Folding energies... MFEI: -30.855 AMFE: -0.652 GC content %: 47.334 | |
| Hvulgare_HORVU7Hr1G119520.27 HORVU7Hr1G119520.27 |
High | No | 949 | OG0050395 | Get ORF Coding potential... Type: noncoding Potential: -0.697 Folding energies... MFEI: -32.413 AMFE: -0.648 GC content %: 50.053 | |
| Hvulgare_HORVU7Hr1G119520.28 HORVU7Hr1G119520.28 |
High | No | 1267 | OG0002174 | Get ORF Coding potential... Type: noncoding Potential: -0.787 Folding energies... MFEI: -30.931 AMFE: -0.648 GC content %: 47.751 | |
| Hvulgare_HORVU7Hr1G119520.29 HORVU7Hr1G119520.29 |
High | No | 1066 | OG0002174 | Get ORF Coding potential... Type: noncoding Potential: -0.755 Folding energies... MFEI: -28.011 AMFE: -0.642 GC content %: 43.621 | |
| Hvulgare_HORVU7Hr1G119520.30 HORVU7Hr1G119520.30 |
High | No | 1051 | OG0050396 | Get ORF Coding potential... Type: noncoding Potential: -0.611 Folding energies... MFEI: -27.659 AMFE: -0.620 GC content %: 44.624 | |
| Hvulgare_HORVU7Hr1G119520.31 HORVU7Hr1G119520.31 |
High | No | 1631 | OG0019605 | Get ORF Coding potential... Type: noncoding Potential: -0.761 Folding energies... MFEI: -23.366 AMFE: -0.626 GC content %: 37.339 | |
| Hvulgare_HORVU7Hr1G119520.32 HORVU7Hr1G119520.32 |
High | No | 988 | OG0002174 | Get ORF Coding potential... Type: noncoding Potential: -0.739 Folding energies... MFEI: -27.591 AMFE: -0.640 GC content %: 43.117 | |
| Hvulgare_HORVU7Hr1G119520.33 HORVU7Hr1G119520.33 |
High | No | 560 | OG0050397 | Get ORF Coding potential... Type: noncoding Potential: -0.536 Folding energies... MFEI: -25.911 AMFE: -0.592 GC content %: 43.750 | |
| Hvulgare_HORVU7Hr1G119520.34 HORVU7Hr1G119520.34 |
High | No | 1552 | OG0050398 | Get ORF Coding potential... Type: noncoding Potential: -0.799 Folding energies... MFEI: -27.274 AMFE: -0.663 GC content %: 41.108 | |
| Hvulgare_HORVU7Hr1G119520.35 HORVU7Hr1G119520.35 |
High | No | 1724 | OG0019605 | Get ORF Coding potential... Type: noncoding Potential: -0.839 Folding energies... MFEI: -24.089 AMFE: -0.648 GC content %: 37.181 | |
| Hvulgare_HORVU7Hr1G119520.36 HORVU7Hr1G119520.36 |
High | No | 1033 | OG0013416 | Get ORF Coding potential... Type: noncoding Potential: -0.674 Folding energies... MFEI: -27.106 AMFE: -0.644 GC content %: 42.110 | |
| Hvulgare_HORVU7Hr1G119520.37 HORVU7Hr1G119520.37 |
High | No | 638 | OG0013419 | Get ORF Coding potential... Type: noncoding Potential: -0.601 Folding energies... MFEI: -27.351 AMFE: -0.644 GC content %: 42.476 | |
| Hvulgare_HORVU7Hr1G119520.38 HORVU7Hr1G119520.38 |
High | No | 741 | OG0019605 | Get ORF Coding potential... Type: noncoding Potential: -0.592 Folding energies... MFEI: -25.479 AMFE: -0.603 GC content %: 42.240 | |
| Hvulgare_HORVU7Hr1G119520.39 HORVU7Hr1G119520.39 |
High | No | 453 | OG0013419 | Get ORF Coding potential... Type: noncoding Potential: -0.539 Folding energies... MFEI: -26.932 AMFE: -0.570 GC content %: 47.241 | |
| Hvulgare_HORVU7Hr1G119520.40 HORVU7Hr1G119520.40 |
High | No | 1030 | OG0002174 | Get ORF Coding potential... Type: noncoding Potential: -0.746 Folding energies... MFEI: -28.272 AMFE: -0.650 GC content %: 43.495 | |
| Hvulgare_HORVU7Hr1G119520.41 HORVU7Hr1G119520.41 |
High | No | 2578 | OG0013418 | Get ORF Coding potential... Type: noncoding Potential: -0.841 Folding energies... MFEI: -25.140 AMFE: -0.660 GC content %: 38.092 | |
| Hvulgare_HORVU7Hr1G119520.42 HORVU7Hr1G119520.42 |
High | No | 1012 | OG0002174 | Get ORF Coding potential... Type: noncoding Potential: -0.670 Folding energies... MFEI: -27.352 AMFE: -0.650 GC content %: 42.095 | |
| Hvulgare_HORVU7Hr1G119520.43 HORVU7Hr1G119520.43 |
High | No | 401 | OG0050399 | Get ORF Coding potential... Type: noncoding Potential: -0.525 Folding energies... MFEI: -25.686 AMFE: -0.569 GC content %: 45.137 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Hvulgare_HORVU7Hr1G119520.19 | SwissProt | 2021-04-01 | Q9SIY3 | 5.98e-7 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
