Jregia Jr01 03210

From GreeNC


Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Assembly Species Details

Jregia_Jr01_03210
[ Jr01_03210]
1 2293993 2298250 v2 Juglans regia (Ensembl Plants 51)
Coding?
No


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Orthologous group Sequence Details

Jregia_Jr01_03210_p1
Jr01_03210_p1
Low No 659 OG0050449
Coding potential...
Type: noncoding Potential: -0.488
Folding energies...
MFEI: -26.829 AMFE: -0.618
GC content
%: 43.399


Matches to external databases
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The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias Database Version Hit Evalue
Jregia_Jr01_03210_p1  SwissProt 2021-04-01 Q96A57 1.3e-5


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

Jregia_Jr01_03210.png