Jregia Jr01 15880

From GreeNC


Gene information
Help.png

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Assembly Species Details

Jregia_Jr01_15880
[ Jr01_15880]
1 13824493 13825640 v2 Juglans regia (Ensembl Plants 51)
Coding?
No


Transcript features
Help.png

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Orthologous group Sequence Details

Jregia_Jr01_15880_p5
Jr01_15880_p5
Low No 1148 OG0193398
Coding potential...
Type: coding Potential: 0.869
Folding energies...
MFEI: -36.803 AMFE: -0.608
GC content
%: 60.540


Gene models
Help.png

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

Jregia_Jr01_15880.png