Jregia Jr Scaffold 651 00010

From GreeNC


Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Assembly Species Details

Jregia_Jr_Scaffold_651_00010
[ Jr_Scaffold_651_00010]
LIHL02000661.1 35100 35459 v2 Juglans regia (Ensembl Plants 51)
Coding?
No


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Orthologous group Sequence Details

Jregia_Jr_Scaffold_651_00010_p1
Jr_Scaffold_651_00010_p1
Low No 360 OG0193928
Coding potential...
Type: noncoding Potential: -0.391
Folding energies...
MFEI: -22.139 AMFE: -0.569
GC content
%: 38.889


Matches to external databases
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The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias Database Version Hit Evalue
Jregia_Jr_Scaffold_651_00010_p1  SwissProt 2021-04-01 P0C2F6 3.61e-5
Jregia_Jr_Scaffold_651_00010_p1  RepBase (RepeatMasker) 2014-01-31 LINE/L1


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

Jregia_Jr_Scaffold_651_00010.png