Jregia Jr Scaffold 77 00020

From GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Assembly Species Details

[ Jr_Scaffold_77_00020]
LIHL02000093.1 15142 15693 v2 Juglans regia (Ensembl Plants 51)

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Orthologous group Sequence Details

Low Yes 410 OG0193930
Coding potential...
Type: noncoding Potential: -0.841
Folding energies...
MFEI: -26.805 AMFE: -0.700
GC content
%: 38.293

Matches to external databases

The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias Database Version Hit Evalue
Jregia_Jr_Scaffold_77_00020_p1  Rfam 14.6 mir-29 0.0065
Jregia_Jr_Scaffold_77_00020_p1  RepBase (RepeatMasker) 2014-01-31 LTR/Gypsy

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).