GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Kfedtschenkoi_Kaladp0025s0008 [ Kaladp0025s0008]	Scaffold_25	107302	109316	v1.1	Kalanchoe fedtschenkoi (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Kfedtschenkoi_Kaladp0025s0008.1 Kaladp0025s0008.1	High	No	1905	OG0050538		Get ORF Coding potential... Type: noncoding Potential: -1.068 Folding energies... MFEI: -22.667 AMFE: -0.679 GC content %: 33.386
Kfedtschenkoi_Kaladp0025s0008.2 Kaladp0025s0008.2	High	No	1799	OG0050538		Get ORF Coding potential... Type: noncoding Potential: -1.063 Folding energies... MFEI: -22.668 AMFE: -0.680 GC content %: 33.352

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).