Kfedtschenkoi Kaladp0027s0025
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Kfedtschenkoi_Kaladp0027s0025 [ Kaladp0027s0025] |
Scaffold_27 | 171599 | 173635 | v1.1 | Kalanchoe fedtschenkoi (Phytozome 13) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Kfedtschenkoi_Kaladp0027s0025.1 Kaladp0027s0025.1 |
High | No | 1373 | OG0006040 | Get ORF Coding potential... Type: noncoding Potential: -1.094 Folding energies... MFEI: -26.489 AMFE: -0.621 GC content %: 42.680 | |
| Kfedtschenkoi_Kaladp0027s0025.2 Kaladp0027s0025.2 |
High | No | 1330 | OG0006040 | Get ORF Coding potential... Type: noncoding Potential: -1.118 Folding energies... MFEI: -26.361 AMFE: -0.615 GC content %: 42.857 | |
| Kfedtschenkoi_Kaladp0027s0025.3 Kaladp0027s0025.3 |
High | No | 1350 | OG0006040 | Get ORF Coding potential... Type: noncoding Potential: -1.091 Folding energies... MFEI: -27.881 AMFE: -0.645 GC content %: 43.259 | |
| Kfedtschenkoi_Kaladp0027s0025.4 Kaladp0027s0025.4 |
High | No | 993 | OG0006040 | Get ORF Coding potential... Type: noncoding Potential: -1.060 Folding energies... MFEI: -28.449 AMFE: -0.611 GC content %: 46.526 | |
| Kfedtschenkoi_Kaladp0027s0025.5 Kaladp0027s0025.5 |
High | No | 1035 | OG0006040 | Get ORF Coding potential... Type: noncoding Potential: -1.039 Folding energies... MFEI: -28.570 AMFE: -0.620 GC content %: 46.087 | |
| Kfedtschenkoi_Kaladp0027s0025.6 Kaladp0027s0025.6 |
High | No | 1103 | OG0006040 | Get ORF Coding potential... Type: noncoding Potential: -1.053 Folding energies... MFEI: -28.758 AMFE: -0.636 GC content %: 45.240 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
