GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Kfedtschenkoi_Kaladp0039s0257 [ Kaladp0039s0257]	Scaffold_39	2076120	2078563	v1.1	Kalanchoe fedtschenkoi (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Kfedtschenkoi_Kaladp0039s0257.1 Kaladp0039s0257.1	High	No	498	OG0013433		Get ORF Coding potential... Type: noncoding Potential: -1.198 Folding energies... MFEI: -29.920 AMFE: -0.575 GC content %: 52.008
Kfedtschenkoi_Kaladp0039s0257.2 Kaladp0039s0257.2	High	No	694	OG0013433		Get ORF Coding potential... Type: noncoding Potential: -1.008 Folding energies... MFEI: -24.885 AMFE: -0.527 GC content %: 47.262
Kfedtschenkoi_Kaladp0039s0257.3 Kaladp0039s0257.3	High	No	616	OG0013433		Get ORF Coding potential... Type: noncoding Potential: -1.017 Folding energies... MFEI: -25.925 AMFE: -0.519 GC content %: 50.000
Kfedtschenkoi_Kaladp0039s0257.4 Kaladp0039s0257.4	High	No	533	OG0013433		Get ORF Coding potential... Type: noncoding Potential: -1.263 Folding energies... MFEI: -29.625 AMFE: -0.566 GC content %: 52.345

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).