GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Kfedtschenkoi_Kaladp0048s0428 [ Kaladp0048s0428]	Scaffold_48	3477026	3480439	v1.1	Kalanchoe fedtschenkoi (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Kfedtschenkoi_Kaladp0048s0428.1 Kaladp0048s0428.1	High	No	2222	OG0013435		Get ORF Coding potential... Type: noncoding Potential: -0.924 Folding energies... MFEI: -27.318 AMFE: -0.668 GC content %: 40.909
Kfedtschenkoi_Kaladp0048s0428.2 Kaladp0048s0428.2	High	No	2164	OG0013435		Get ORF Coding potential... Type: noncoding Potential: -0.920 Folding energies... MFEI: -27.029 AMFE: -0.666 GC content %: 40.573
Kfedtschenkoi_Kaladp0048s0428.3 Kaladp0048s0428.3	High	No	1835	OG0013435		Get ORF Coding potential... Type: noncoding Potential: -0.897 Folding energies... MFEI: -26.681 AMFE: -0.677 GC content %: 39.401
Kfedtschenkoi_Kaladp0048s0428.4 Kaladp0048s0428.4	High	No	711	OG0013435		Get ORF Coding potential... Type: noncoding Potential: -0.694 Folding energies... MFEI: -28.664 AMFE: -0.643 GC content %: 44.585

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).