GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Kfedtschenkoi_Kaladp0050s0057 [ Kaladp0050s0057]	Scaffold_50	755170	756344	v1.1	Kalanchoe fedtschenkoi (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Kfedtschenkoi_Kaladp0050s0057.1 Kaladp0050s0057.1	High	No	1144	OG0050595		Get ORF Coding potential... Type: noncoding Potential: -1.148 Folding energies... MFEI: -27.238 AMFE: -0.689 GC content %: 39.510
Kfedtschenkoi_Kaladp0050s0057.2 Kaladp0050s0057.2	High	No	446	OG0050595		Get ORF Coding potential... Type: noncoding Potential: -1.072 Folding energies... MFEI: -24.865 AMFE: -0.609 GC content %: 40.807

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).