Kfedtschenkoi Kaladp0053s0248
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Kfedtschenkoi_Kaladp0053s0248 [ Kaladp0053s0248] |
Scaffold_53 | 1992967 | 1995299 | v1.1 | Kalanchoe fedtschenkoi (Phytozome 13) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Kfedtschenkoi_Kaladp0053s0248.1 Kaladp0053s0248.1 |
High | No | 863 | OG0013436 | Get ORF Coding potential... Type: noncoding Potential: -0.685 Folding energies... MFEI: -27.092 AMFE: -0.614 GC content %: 44.148 | |
| Kfedtschenkoi_Kaladp0053s0248.2 Kaladp0053s0248.2 |
High | No | 644 | OG0050598 | Get ORF Coding potential... Type: noncoding Potential: -0.614 Folding energies... MFEI: -26.801 AMFE: -0.587 GC content %: 45.652 | |
| Kfedtschenkoi_Kaladp0053s0248.3 Kaladp0053s0248.3 |
High | No | 653 | OG0050598 | Get ORF Coding potential... Type: noncoding Potential: -0.617 Folding energies... MFEI: -27.397 AMFE: -0.604 GC content %: 45.329 | |
| Kfedtschenkoi_Kaladp0053s0248.4 Kaladp0053s0248.4 |
High | No | 779 | OG0013436 | Get ORF Coding potential... Type: noncoding Potential: -0.661 Folding energies... MFEI: -27.368 AMFE: -0.625 GC content %: 43.774 | |
| Kfedtschenkoi_Kaladp0053s0248.5 Kaladp0053s0248.5 |
High | No | 659 | OG0013436 | Get ORF Coding potential... Type: noncoding Potential: -0.620 Folding energies... MFEI: -25.933 AMFE: -0.581 GC content %: 44.613 | |
| Kfedtschenkoi_Kaladp0053s0248.6 Kaladp0053s0248.6 |
High | No | 787 | OG0013436 | Get ORF Coding potential... Type: noncoding Potential: -0.664 Folding energies... MFEI: -24.155 AMFE: -0.619 GC content %: 39.009 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
