GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Kfedtschenkoi_Kaladp0055s0533 [ Kaladp0055s0533]	Scaffold_55	4127324	4129424	v1.1	Kalanchoe fedtschenkoi (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Kfedtschenkoi_Kaladp0055s0533.1 Kaladp0055s0533.1	High	No	1461	OG0013437		Get ORF Coding potential... Type: noncoding Potential: -1.271 Folding energies... MFEI: -27.577 AMFE: -0.668 GC content %: 41.273
Kfedtschenkoi_Kaladp0055s0533.2 Kaladp0055s0533.2	High	No	1037	OG0013437		Get ORF Coding potential... Type: noncoding Potential: -1.191 Folding energies... MFEI: -28.592 AMFE: -0.674 GC content %: 42.430
Kfedtschenkoi_Kaladp0055s0533.3 Kaladp0055s0533.3	High	No	1026	OG0013437		Get ORF Coding potential... Type: noncoding Potential: -1.190 Folding energies... MFEI: -28.265 AMFE: -0.670 GC content %: 42.203
Kfedtschenkoi_Kaladp0055s0533.4 Kaladp0055s0533.4	High	No	1450	OG0013437		Get ORF Coding potential... Type: noncoding Potential: -1.271 Folding energies... MFEI: -27.262 AMFE: -0.663 GC content %: 41.103

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).