GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Kfedtschenkoi_Kaladp0064s0005 [ Kaladp0064s0005]	Scaffold_64	37695	38558	v1.1	Kalanchoe fedtschenkoi (Phytozome 13)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Kfedtschenkoi_Kaladp0064s0005.2 Kaladp0064s0005.2	High	No	600	OG0050628		Get ORF Coding potential... Type: noncoding Potential: -0.629 Folding energies... MFEI: -27.050 AMFE: -0.608 GC content %: 44.500
Kfedtschenkoi_Kaladp0064s0005.3 Kaladp0064s0005.3	High	No	610	OG0050628		Get ORF Coding potential... Type: noncoding Potential: -0.693 Folding energies... MFEI: -29.623 AMFE: -0.639 GC content %: 46.393

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).