Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Kfedtschenkoi_Kaladp0073s0073 [ Kaladp0073s0073] |
Scaffold_73 | 527694 | 528766 | v1.1 | Kalanchoe fedtschenkoi (Phytozome 13) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Kfedtschenkoi_Kaladp0073s0073.1 Kaladp0073s0073.1 |
Low | No | 870 | OG0013441 | Get ORF Coding potential... Type: noncoding Potential: -1.178 Folding energies... MFEI: -24.667 AMFE: -0.599 GC content %: 41.149 | |
Kfedtschenkoi_Kaladp0073s0073.2 Kaladp0073s0073.2 |
Low | No | 944 | OG0013441 | Get ORF Coding potential... Type: noncoding Potential: -1.204 Folding energies... MFEI: -23.729 AMFE: -0.588 GC content %: 40.360 | |
Kfedtschenkoi_Kaladp0073s0073.3 Kaladp0073s0073.3 |
Low | No | 866 | OG0013441 | Get ORF Coding potential... Type: noncoding Potential: -1.190 Folding energies... MFEI: -24.665 AMFE: -0.600 GC content %: 41.109 | |
Kfedtschenkoi_Kaladp0073s0073.4 Kaladp0073s0073.4 |
Low | No | 602 | OG0013441 | Get ORF Coding potential... Type: noncoding Potential: -1.106 Folding energies... MFEI: -26.229 AMFE: -0.612 GC content %: 42.857 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Kfedtschenkoi_Kaladp0073s0073.4 | RepBase (RepeatMasker) | 2014-01-31 | LTR/ERV1 | |
Kfedtschenkoi_Kaladp0073s0073.1 | RepBase (RepeatMasker) | 2014-01-31 | LTR/ERV1 | |
Kfedtschenkoi_Kaladp0073s0073.2 | RepBase (RepeatMasker) | 2014-01-31 | LTR/ERV1 | |
Kfedtschenkoi_Kaladp0073s0073.3 | RepBase (RepeatMasker) | 2014-01-31 | LTR/ERV1 |