GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Kfedtschenkoi_Kaladp0099s0145 [ Kaladp0099s0145]	Scaffold_99	1149012	1151794	v1.1	Kalanchoe fedtschenkoi (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Kfedtschenkoi_Kaladp0099s0145.1 Kaladp0099s0145.1	High	No	1736	OG0050672		Get ORF Coding potential... Type: noncoding Potential: -1.099 Folding energies... MFEI: -25.213 AMFE: -0.669 GC content %: 37.673
Kfedtschenkoi_Kaladp0099s0145.2 Kaladp0099s0145.2	High	No	1228	OG0050672		Get ORF Coding potential... Type: noncoding Potential: -0.947 Folding energies... MFEI: -27.850 AMFE: -0.681 GC content %: 40.879

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).