Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Kfedtschenkoi_Kaladp0707s0001 [ Kaladp0707s0001] |
Scaffold_707 | 3 | 1278 | v1.1 | Kalanchoe fedtschenkoi (Phytozome 13) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Kfedtschenkoi_Kaladp0707s0001.1 Kaladp0707s0001.1 |
Low | No | 1183 | OG0013445 | Get ORF Coding potential... Type: noncoding Potential: -1.113 Folding energies... MFEI: -26.830 AMFE: -0.678 GC content %: 39.560 | |
Kfedtschenkoi_Kaladp0707s0001.2 Kaladp0707s0001.2 |
Low | No | 1160 | OG0013445 | Get ORF Coding potential... Type: noncoding Potential: -1.106 Folding energies... MFEI: -27.759 AMFE: -0.694 GC content %: 40.000 | |
Kfedtschenkoi_Kaladp0707s0001.3 Kaladp0707s0001.3 |
Low | No | 990 | OG0013445 | Get ORF Coding potential... Type: noncoding Potential: -1.216 Folding energies... MFEI: -28.202 AMFE: -0.705 GC content %: 40.000 | |
Kfedtschenkoi_Kaladp0707s0001.4 Kaladp0707s0001.4 |
Low | No | 1098 | OG0013445 | Get ORF Coding potential... Type: noncoding Potential: -1.098 Folding energies... MFEI: -26.239 AMFE: -0.672 GC content %: 39.071 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Kfedtschenkoi_Kaladp0707s0001.4 | SwissProt | 2021-04-01 | Q9ULD4 | 5.36e-5 |
Kfedtschenkoi_Kaladp0707s0001.1 | RepBase (RepeatMasker) | 2014-01-31 | LTR? | |
Kfedtschenkoi_Kaladp0707s0001.2 | RepBase (RepeatMasker) | 2014-01-31 | LTR? | |
Kfedtschenkoi_Kaladp0707s0001.1 | SwissProt | 2021-04-01 | B2KF05 | 1.22e-8 |
Kfedtschenkoi_Kaladp0707s0001.3 | RepBase (RepeatMasker) | 2014-01-31 | LTR? | |
Kfedtschenkoi_Kaladp0707s0001.2 | SwissProt | 2021-04-01 | Q9ULD4 | 9.56e-6 |
Kfedtschenkoi_Kaladp0707s0001.4 | RepBase (RepeatMasker) | 2014-01-31 | LTR? | |
Kfedtschenkoi_Kaladp0707s0001.3 | SwissProt | 2021-04-01 | Q9ULD4 | 4.27e-5 |