Kfedtschenkoi Kaladp0764s0001
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Kfedtschenkoi_Kaladp0764s0001 [ Kaladp0764s0001] |
Scaffold_764 | 21 | 1022 | v1.1 | Kalanchoe fedtschenkoi (Phytozome 13) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Kfedtschenkoi_Kaladp0764s0001.1 Kaladp0764s0001.1 |
High | No | 869 | OG0003374 | Get ORF Coding potential... Type: noncoding Potential: -1.279 Folding energies... MFEI: -27.227 AMFE: -0.636 GC content %: 42.808 | |
| Kfedtschenkoi_Kaladp0764s0001.2 Kaladp0764s0001.2 |
High | No | 670 | OG0003374 | Get ORF Coding potential... Type: noncoding Potential: -1.229 Folding energies... MFEI: -27.612 AMFE: -0.629 GC content %: 43.881 | |
| Kfedtschenkoi_Kaladp0764s0001.3 Kaladp0764s0001.3 |
High | No | 803 | OG0003374 | Get ORF Coding potential... Type: noncoding Potential: -1.398 Folding energies... MFEI: -26.364 AMFE: -0.624 GC content %: 42.217 | |
| Kfedtschenkoi_Kaladp0764s0001.4 Kaladp0764s0001.4 |
High | No | 912 | OG0003374 | Get ORF Coding potential... Type: noncoding Potential: -1.401 Folding energies... MFEI: -25.724 AMFE: -0.616 GC content %: 41.776 | |
| Kfedtschenkoi_Kaladp0764s0001.5 Kaladp0764s0001.5 |
High | No | 779 | OG0003374 | Get ORF Coding potential... Type: noncoding Potential: -1.259 Folding energies... MFEI: -26.688 AMFE: -0.619 GC content %: 43.132 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
