GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Kfedtschenkoi_Kaladp0844s0022 [ Kaladp0844s0022]	Scaffold_844	377564	379614	v1.1	Kalanchoe fedtschenkoi (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Kfedtschenkoi_Kaladp0844s0022.1 Kaladp0844s0022.1	High	No	584	OG0050703		Get ORF Coding potential... Type: noncoding Potential: -0.950 Folding energies... MFEI: -25.342 AMFE: -0.630 GC content %: 40.240
Kfedtschenkoi_Kaladp0844s0022.2 Kaladp0844s0022.2	High	No	581	OG0050703		Get ORF Coding potential... Type: noncoding Potential: -0.949 Folding energies... MFEI: -25.370 AMFE: -0.633 GC content %: 40.103

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).