Lalbus Lalb Chr00c02g0404091

From GreeNC


Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Assembly Species Details

Lalbus_Lalb_Chr00c02g0404091
[ Lalb_Chr00c02g0404091]
Lalb_Chr00c02 467454 467807 v1 Lupinus albus (Phytozome 13)
Coding?
No


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Orthologous group Sequence Details

Lalbus_Lalb_Chr00c02g0404091
Lalb_Chr00c02g0404091
Low No 354 OG0205746
Coding potential...
Type: noncoding Potential: -1.139
Folding energies...
MFEI: -24.774 AMFE: -0.559
GC content
%: 44.350


Matches to external databases
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The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias Database Version Hit Evalue
Lalbus_Lalb_Chr00c02g0404091  RepBase (RepeatMasker) 2014-01-31 LTR/Gypsy


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

Lalbus_Lalb_Chr00c02g0404091.png