Lalbus Lalb Chr00c06g0404581

From GreeNC


Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Assembly Species Details

Lalbus_Lalb_Chr00c06g0404581
[ Lalb_Chr00c06g0404581]
Lalb_Chr00c06 382216 382634 v1 Lupinus albus (Phytozome 13)
Coding?
No


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Orthologous group Sequence Details

Lalbus_Lalb_Chr00c06g0404581
Lalb_Chr00c06g0404581
Low No 419 OG0205755
Coding potential...
Type: noncoding Potential: -1.374
Folding energies...
MFEI: -36.301 AMFE: -0.850
GC content
%: 42.721


Matches to external databases
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The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias Database Version Hit Evalue
Lalbus_Lalb_Chr00c06g0404581  RepBase (RepeatMasker) 2014-01-31 LTR/Copia


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

Lalbus_Lalb_Chr00c06g0404581.png