Lalbus Lalb Chr00c21g0405771

From GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Assembly Species Details

[ Lalb_Chr00c21g0405771]
Lalb_Chr00c21 143019 143358 v1 Lupinus albus (Phytozome 13)

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Orthologous group Sequence Details

Low Yes 340 OG0051210
Coding potential...
Type: noncoding Potential: -1.116
Folding energies...
MFEI: -28.588 AMFE: -0.694
GC content
%: 41.176

Matches to external databases

The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias Database Version Hit Evalue
Lalbus_Lalb_Chr00c21g0405771  SwissProt 2021-04-01 P08834 2.64e-5
Lalbus_Lalb_Chr00c21g0405771  Rfam 14.6 mir-6 5.9e-4

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).