GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Lperrieri_LPERR01G04340 [ LPERR01G04340]	1	2959685	2960729	v1.4	Leersia perrieri (Ensembl Plants 51)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Lperrieri_LPERR01G04340.1 LPERR01G04340.1	High	No	284	OG0019709		Get ORF Coding potential... Type: noncoding Potential: -0.908 Folding energies... MFEI: -32.042 AMFE: -0.603 GC content %: 53.169
Lperrieri_LPERR01G04340.2 LPERR01G04340.2	High	No	209	OG0019709		Get ORF Coding potential... Type: noncoding Potential: -0.913 Folding energies... MFEI: -26.316 AMFE: -0.509 GC content %: 51.675
Lperrieri_LPERR01G04340.3 LPERR01G04340.3	High	No	227	OG0019709		Get ORF Coding potential... Type: noncoding Potential: -0.915 Folding energies... MFEI: -31.366 AMFE: -0.561 GC content %: 55.947

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).