GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Lperrieri_LPERR01G19350 [ LPERR01G19350]	1	17092443	17095796	v1.4	Leersia perrieri (Ensembl Plants 51)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Lperrieri_LPERR01G19350.1 LPERR01G19350.1	Low	No	542	OG0051000		Get ORF Coding potential... Type: noncoding Potential: -0.680 Folding energies... MFEI: -48.432 AMFE: -0.721 GC content %: 67.159
Lperrieri_LPERR01G19350.2 LPERR01G19350.2	High	No	419	OG0051000		Get ORF Coding potential... Type: noncoding Potential: -1.029 Folding energies... MFEI: -49.737 AMFE: -0.714 GC content %: 69.690

Matches to external databases

The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias	Database	Version	Hit	Evalue
Lperrieri_LPERR01G19350.1	SwissProt	2021-04-01	Q8H184	4.43e-7

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).