GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Lperrieri_LPERR01G29870 [ LPERR01G29870]	1	25448063	25454808	v1.4	Leersia perrieri (Ensembl Plants 51)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Lperrieri_LPERR01G29870.1 LPERR01G29870.1	High	No	504	OG0051006		Get ORF Coding potential... Type: noncoding Potential: -0.901 Folding energies... MFEI: -43.353 AMFE: -0.694 GC content %: 62.500
Lperrieri_LPERR01G29870.2 LPERR01G29870.2	High	No	463	OG0051006		Get ORF Coding potential... Type: noncoding Potential: -0.948 Folding energies... MFEI: -41.879 AMFE: -0.697 GC content %: 60.043

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).