GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Lperrieri_LPERR03G29460 [ LPERR03G29460]	3	25532090	25535901	v1.4	Leersia perrieri (Ensembl Plants 51)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Lperrieri_LPERR03G29460.1 LPERR03G29460.1	High	No	1166	OG0051039		Get ORF Coding potential... Type: noncoding Potential: -1.103 Folding energies... MFEI: -26.098 AMFE: -0.575 GC content %: 45.369
Lperrieri_LPERR03G29460.2 LPERR03G29460.2	High	No	807	OG0051039		Get ORF Coding potential... Type: noncoding Potential: -0.995 Folding energies... MFEI: -23.445 AMFE: -0.550 GC content %: 42.627

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).