GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Lperrieri_LPERR04G20800 [ LPERR04G20800]	4	19503479	19504037	v1.4	Leersia perrieri (Ensembl Plants 51)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Lperrieri_LPERR04G20800.1 LPERR04G20800.1	High	No	255	OG0051055		Get ORF Coding potential... Type: noncoding Potential: -0.567 Folding energies... MFEI: -43.843 AMFE: -0.625 GC content %: 70.196
Lperrieri_LPERR04G20800.2 LPERR04G20800.2	High	No	213	OG0051055		Get ORF Coding potential... Type: noncoding Potential: -0.693 Folding energies... MFEI: -41.033 AMFE: -0.575 GC content %: 71.362

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).