Lperrieri LPERR05G02260
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Lperrieri_LPERR05G02260 [ LPERR05G02260] |
5 | 1621292 | 1628697 | v1.4 | Leersia perrieri (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Lperrieri_LPERR05G02260.1 LPERR05G02260.1 |
Low | No | 330 | OG0006055 | Get ORF Coding potential... Type: coding Potential: 0.214 Folding energies... MFEI: -31.303 AMFE: -0.630 GC content %: 49.697 | |
| Lperrieri_LPERR05G02260.2 LPERR05G02260.2 |
Low | No | 297 | OG0006055 | Get ORF Coding potential... Type: coding Potential: 0.349 Folding energies... MFEI: -26.397 AMFE: -0.548 GC content %: 48.148 | |
| Lperrieri_LPERR05G02260.4 LPERR05G02260.4 |
Low | No | 330 | OG0006055 | Get ORF Coding potential... Type: coding Potential: 0.468 Folding energies... MFEI: -28.061 AMFE: -0.597 GC content %: 46.970 | |
| Lperrieri_LPERR05G02260.5 LPERR05G02260.5 |
Low | No | 273 | OG0006055 | Get ORF Coding potential... Type: coding Potential: 0.065 Folding energies... MFEI: -30.916 AMFE: -0.599 GC content %: 51.648 | |
| Lperrieri_LPERR05G02260.6 LPERR05G02260.6 |
Low | No | 240 | OG0006055 | Get ORF Coding potential... Type: coding Potential: 0.278 Folding energies... MFEI: -30.042 AMFE: -0.601 GC content %: 50.000 | |
| Lperrieri_LPERR05G02260.7 LPERR05G02260.7 |
Low | No | 249 | OG0006055 | Get ORF Coding potential... Type: coding Potential: 0.743 Folding energies... MFEI: -29.679 AMFE: -0.596 GC content %: 49.799 | |
| Lperrieri_LPERR05G02260.8 LPERR05G02260.8 |
Low | No | 225 | OG0202573 | Get ORF Coding potential... Type: coding Potential: 0.343 Folding energies... MFEI: -26.089 AMFE: -0.524 GC content %: 49.778 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
