GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Lperrieri_LPERR05G09300 [ LPERR05G09300]	5	9147172	9150602	v1.4	Leersia perrieri (Ensembl Plants 51)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Lperrieri_LPERR05G09300.1 LPERR05G09300.1	High	No	1590	OG0019719		Get ORF Coding potential... Type: noncoding Potential: -0.959 Folding energies... MFEI: -30.126 AMFE: -0.625 GC content %: 48.239
Lperrieri_LPERR05G09300.2 LPERR05G09300.2	High	No	1447	OG0019719		Get ORF Coding potential... Type: noncoding Potential: -0.948 Folding energies... MFEI: -29.544 AMFE: -0.605 GC content %: 48.860
Lperrieri_LPERR05G09300.3 LPERR05G09300.3	High	No	1825	OG0019719		Get ORF Coding potential... Type: noncoding Potential: -0.975 Folding energies... MFEI: -28.499 AMFE: -0.619 GC content %: 46.027

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).