GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Lperrieri_LPERR06G14580 [ LPERR06G14580]	6	13112352	13122876	v1.4	Leersia perrieri (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Lperrieri_LPERR06G14580.2 LPERR06G14580.2	High	No	1556	OG0019724		Get ORF Coding potential... Type: noncoding Potential: -0.995 Folding energies... MFEI: -33.625 AMFE: -0.649 GC content %: 51.799
Lperrieri_LPERR06G14580.3 LPERR06G14580.3	High	No	1200	OG0019724		Get ORF Coding potential... Type: noncoding Potential: -0.941 Folding energies... MFEI: -31.883 AMFE: -0.676 GC content %: 47.167
Lperrieri_LPERR06G14580.4 LPERR06G14580.4	High	No	940	OG0019724		Get ORF Coding potential... Type: noncoding Potential: -0.881 Folding energies... MFEI: -31.436 AMFE: -0.652 GC content %: 48.191

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).