GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Lperrieri_LPERR07G21390 [ LPERR07G21390]	7	20329514	20337447	v1.4	Leersia perrieri (Ensembl Plants 51)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Lperrieri_LPERR07G21390.1 LPERR07G21390.1	High	No	296	OG0203300		Get ORF Coding potential... Type: noncoding Potential: -0.920 Folding energies... MFEI: -34.189 AMFE: -0.606 GC content %: 56.419
Lperrieri_LPERR07G21390.2 LPERR07G21390.2	High	No	260	OG0203301		Get ORF Coding potential... Type: noncoding Potential: -0.926 Folding energies... MFEI: -34.231 AMFE: -0.589 GC content %: 58.077

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).