GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Lperrieri_LPERR08G08590 [ LPERR08G08590]	8	8087631	8090670	v1.4	Leersia perrieri (Ensembl Plants 51)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Lperrieri_LPERR08G08590.1 LPERR08G08590.1	High	No	308	OG0203421		Get ORF Coding potential... Type: noncoding Potential: -0.701 Folding energies... MFEI: -36.461 AMFE: -0.610 GC content %: 59.740
Lperrieri_LPERR08G08590.2 LPERR08G08590.2	Low	No	2843	OG0203422		Get ORF Coding potential... Type: noncoding Potential: -0.853 Folding energies... MFEI: -29.271 AMFE: -0.709 GC content %: 41.259

Matches to external databases

The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias	Database	Version	Hit	Evalue
Lperrieri_LPERR08G08590.2	RepBase (RepeatMasker)	2014-01-31	DNA/MULE-MuDR

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).