GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Lsativa_Lsat_1_v5_gn_2_30820 [ Lsat_1_v5_gn_2_30820]	Lsat_1_v8_lg_2	67373058	67374634	v5	Lactuca sativa (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Lsativa_Lsat_1_v5_gn_2_30820.1 Lsat_1_v5_gn_2_30820.1	High	No	258	[1]		Get ORF Coding potential... Type: noncoding Potential: -0.619 Folding energies... MFEI: -22.093 AMFE: -0.523 GC content %: 42.248
Lsativa_Lsat_1_v5_gn_2_30820.2 Lsat_1_v5_gn_2_30820.2	High	No	504	[2]		Get ORF Coding potential... Type: noncoding Potential: -0.772 Folding energies... MFEI: -21.310 AMFE: -0.556 GC content %: 38.294
Lsativa_Lsat_1_v5_gn_2_30820.3 Lsat_1_v5_gn_2_30820.3	High	No	461	[3]		Get ORF Coding potential... Type: noncoding Potential: -1.040 Folding energies... MFEI: -20.456 AMFE: -0.510 GC content %: 40.130

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).