Lsativa Lsat 1 v5 gn 2 30820

From GreeNC


Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Assembly Species Details

Lsativa_Lsat_1_v5_gn_2_30820
[ Lsat_1_v5_gn_2_30820]
Lsat_1_v8_lg_2 67373058 67374634 v5 Lactuca sativa (Phytozome 13)
Coding?
No


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Orthologous group Sequence Details

Lsativa_Lsat_1_v5_gn_2_30820.1
Lsat_1_v5_gn_2_30820.1
High No 258 [1]
Coding potential...
Type: noncoding Potential: -0.619
Folding energies...
MFEI: -22.093 AMFE: -0.523
GC content
%: 42.248
Lsativa_Lsat_1_v5_gn_2_30820.2
Lsat_1_v5_gn_2_30820.2
High No 504 [2]
Coding potential...
Type: noncoding Potential: -0.772
Folding energies...
MFEI: -21.310 AMFE: -0.556
GC content
%: 38.294
Lsativa_Lsat_1_v5_gn_2_30820.3
Lsat_1_v5_gn_2_30820.3
High No 461 [3]
Coding potential...
Type: noncoding Potential: -1.040
Folding energies...
MFEI: -20.456 AMFE: -0.510
GC content
%: 40.130


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

Lsativa_Lsat_1_v5_gn_2_30820.png