GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Lsativa_Lsat_1_v5_gn_2_66880 [ Lsat_1_v5_gn_2_66880]	Lsat_1_v8_lg_2	137253888	137256984	v5	Lactuca sativa (Phytozome 13)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Lsativa_Lsat_1_v5_gn_2_66880.2 Lsat_1_v5_gn_2_66880.2	High	No	246	[1]		Get ORF Coding potential... Type: noncoding Potential: -0.175 Folding energies... MFEI: -27.561 AMFE: -0.665 GC content %: 41.463
Lsativa_Lsat_1_v5_gn_2_66880.5 Lsat_1_v5_gn_2_66880.5	High	No	246	[2]		Get ORF Coding potential... Type: noncoding Potential: -0.175 Folding energies... MFEI: -27.561 AMFE: -0.665 GC content %: 41.463

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).