GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Lsativa_Lsat_1_v5_gn_3_14180 [ Lsat_1_v5_gn_3_14180]	Lsat_1_v8_lg_3	18421467	18424384	v5	Lactuca sativa (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Lsativa_Lsat_1_v5_gn_3_14180.1 Lsat_1_v5_gn_3_14180.1	High	No	207	[1]		Get ORF Coding potential... Type: noncoding Potential: -0.880 Folding energies... MFEI: -25.652 AMFE: -0.610 GC content %: 42.029
Lsativa_Lsat_1_v5_gn_3_14180.2 Lsat_1_v5_gn_3_14180.2	High	No	519	[2]		Get ORF Coding potential... Type: noncoding Potential: -0.992 Folding energies... MFEI: -24.355 AMFE: -0.726 GC content %: 33.526
Lsativa_Lsat_1_v5_gn_3_14180.3 Lsat_1_v5_gn_3_14180.3	High	No	477	[3]		Get ORF Coding potential... Type: noncoding Potential: -1.024 Folding energies... MFEI: -25.283 AMFE: -0.588 GC content %: 42.977

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).