Lsativa Lsat 1 v5 gn 4 120240

From GreeNC


Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Assembly Species Details

Lsativa_Lsat_1_v5_gn_4_120240
[ Lsat_1_v5_gn_4_120240]
Lsat_1_v8_lg_4 221509423 221511527 v5 Lactuca sativa (Phytozome 13)
Coding?
No


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Orthologous group Sequence Details

Lsativa_Lsat_1_v5_gn_4_120240.1
Lsat_1_v5_gn_4_120240.1
High No 288 [1]
Coding potential...
Type: noncoding Potential: -0.724
Folding energies...
MFEI: -19.236 AMFE: -0.528
GC content
%: 36.458
Lsativa_Lsat_1_v5_gn_4_120240.2
Lsat_1_v5_gn_4_120240.2
High No 347 [2]
Coding potential...
Type: noncoding Potential: -0.825
Folding energies...
MFEI: -17.464 AMFE: -0.577
GC content
%: 30.259


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

Lsativa_Lsat_1_v5_gn_4_120240.png