Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Lsativa_Lsat_1_v5_gn_5_118560 [ Lsat_1_v5_gn_5_118560] |
Lsat_1_v8_lg_5 | 240214451 | 240216037 | v5 | Lactuca sativa (Phytozome 13) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Lsativa_Lsat_1_v5_gn_5_118560.1 Lsat_1_v5_gn_5_118560.1 |
Low | No | 282 | [1] | Get ORF Coding potential... Type: noncoding Potential: -0.923 Folding energies... MFEI: -25.213 AMFE: -0.512 GC content %: 49.291 | |
Lsativa_Lsat_1_v5_gn_5_118560.3 Lsat_1_v5_gn_5_118560.3 |
Low | No | 758 | [2] | Get ORF Coding potential... Type: noncoding Potential: -1.129 Folding energies... MFEI: -24.723 AMFE: -0.601 GC content %: 41.161 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Lsativa_Lsat_1_v5_gn_5_118560.1 | SwissProt | 2021-04-01 | Q6NNL9 | 2.5e-5 |
Lsativa_Lsat_1_v5_gn_5_118560.3 | SwissProt | 2021-04-01 | Q6NNL9 | 3.81e-4 |