Lsativa Lsat 1 v5 gn 8 144380

From GreeNC


Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Assembly Species Details

Lsativa_Lsat_1_v5_gn_8_144380
[ Lsat_1_v5_gn_8_144380]
Lsat_1_v8_lg_8 242010112 242014539 v5 Lactuca sativa (Phytozome 13)
Coding?
No


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Orthologous group Sequence Details

Lsativa_Lsat_1_v5_gn_8_144380.1
Lsat_1_v5_gn_8_144380.1
High No 345 [1]
Coding potential...
Type: noncoding Potential: -0.151
Folding energies...
MFEI: -20.580 AMFE: -0.526
GC content
%: 39.130


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

Lsativa_Lsat_1_v5_gn_8_144380.png