Macuminata Ma00 g04720

From GreeNC


Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Assembly Species Details

Macuminata_Ma00_g04720
[ Ma00_g04720]
CAJGYN010000024.1 40591877 40592193 v2 Musa acuminata (Ensembl Plants 51)
Coding?
No


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Orthologous group Sequence Details

Macuminata_Ma00_t04720.1
Ma00_t04720.1
Low No 225 OG0224669
Coding potential...
Type: noncoding Potential: -0.861
Folding energies...
MFEI: -21.022 AMFE: -0.385
GC content
%: 54.667


Matches to external databases
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The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias Database Version Hit Evalue
Macuminata_Ma00_t04720.1  RepBase (RepeatMasker) 2014-01-31 LTR/Gypsy


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

Macuminata_Ma00_g04720.png